Effect of seasonality and physicochemical parameters on bacterial communities in two hot spring microbial mats from Araró, Mexico
Cristina M. Prieto-Barajas, Ruth Alfaro-Cuevas, Eduardo Valencia-Cantero, Gustavo Santoyo ⁎ ✉
Abstract
In this study, we explored the diversity of culturable bacterial communities residing in hot springs from Araró, México, and analysed the effect of seasonality and related changes in physicochemical parameters of spring water. Two hot springs with unique features, Tina and Bonita, were analysed. Seventy-nine unique 16S rRNA gene phylotypes were detected, belonging to the bacterial phyla Firmicutes, Proteobacteria, and Actinobacteria. A group of dominant phylotypes of the genus Bacillus was recovered in 3 out of 4 of the sampling seasons. Another group of phylotypes was recovered in 2 samplings, while the remaining groups were detected in only 1 season. Ecological indexes for species richness and evenness showed moderate to low diversity in both hot springs, and a Sørensen analysis revealed that the 2 communities shared 64% of their bacterial phylotypes. Physicochemical parameters measured every season showed slight variations, except for temperature and arsenic content. Fluctuations in bacterial composition in the Tina hot spring were correlated mainly with salt content, while diversity in the Bonita hot spring was significantly correlated with temperature, pH, and arsenic content.
© 2017 Universidad Nacional Autónoma de México, Instituto de Biología. This is an open access article under the CC BY-NC-ND license
(http://creativecommons.org/licenses/by-nc-nd/4.0/).
Keywords:
Microbial mats; Hot springs; Bacterial diversity; Environmental factors; Arsenic; Thermophilic communities
Efecto de la estacionalidad y de los parámetros fisicoquímicos sobre las comunidades bacterianas de tapetes microbianos de manantiales termales de Araró, México
Resumen
En este estudio se explora el efecto de la estacionalidad y los cambios fisicoquímicos sobre la diversidad cultivable de la comunidad bacteriana de dos manantiales termales de Araró, México. Se encontraron 79 filotipos de 16S rRNA de las divisiones bacterianas Firmicutes, Proteobacteria y Actinobacteria. Un grupo de filotipos del género Bacillus fue el más dominante, aislado en 3 de las 4 estaciones muestreadas, otro grupo de filotipos se recuperó en 2 muestreos, mientras que los grupos restantes se detectaron en sólo 1 temporada. Los índices ecológicos para riqueza de especies y equitabilidad muestran una diversidad de moderada a baja en ambos manantiales, mientras que el índice de Sørensen resulta en que ambas comunidades de comparten hasta un 64% del total de los filotipos. Los parámetros fisicoquímicos medidos muestran ligeras variaciones estacionales, excepto la temperatura y el contenido de arsénico. Las fluctuaciones en la composición bacteriana en Tina estuvieron correlacionadas principalmente al contenido salino mientras que en Bonita las variaciones se asociaron con la temperatura, pH y contenido de arsénico.
© 2017 Universidad Nacional Autónoma de México, Instituto de Biología. Este es un artículo Open Access bajo la licencia CC BY-NC-ND
Palabras clave
Tapetes microbianos; Manantiales termales; Diversidad bacteriana; Factores ambientales; Arsénico; Comunidades termófilas
Introduction
Hot springs can be found in many regions of the world. Each hot spring has unique geophysical and biological characteristics, making them interesting subjects of research with potential value for either biotechnological or ecological purposes ( Briggs et al., 2014; Brock, 1997; Klatt et al., 2011 ; Lau, Aitchison, & Pointing, 2009 ; Tirawongsaroj et al., 2008 ). Because of these differences, bacterial diversity in microbial mats is expected to be different among hot springs. Analyses of microbial diversity have been reported for hot springs located in many countries, including the USA ( Ward, Ferris, Nold, & Bateson, 1998 ), Russia (Perevalova et al., 2008), Australia (Kimura et al., 2005), Thailand ( Portillo, Sirin, Kanoksilapatham, & González, 2009 ), Bulgaria (Tomova et al., 2010), Colombia (Bohorquez et al., 2012), Philippines (Huang et al., 2013), Chile ( Mackenzie, Pedrós-Alió, & Díez, 2013 ) and China (Briggs et al., 2014). The physicochemical parameters of source waters in some hot springs can vary by season while in others, these parameters can be very stable. These parameters can influence the microbial diversity in springs. A few studies have assessed these parameters in association with microbial community composition in hot springs ( Briggs et al., 2014; Ferris & Ward, 1997; Mackenzie et al., 2013 ). For example, microbial diversity was surveyed in 3 hot springs located in La Patagonia, Chile, over 2 seasons. The authors found differences in the microbial communities between the seasons, probably due to temperature variations ( Mackenzie et al., 2013 ). Other factors, such as pH, levels of hydrogen sulphide, and temperature, have been associated with the presence of certain microbial species ( Briggs et al., 2014; Purcell et al., 2007; Ward & Castenholz, 2000 ). To determine the bacterial diversity in microbial mats, both cultivation-dependent and -independent approaches have been employed, depending on the research goals. A cultivation-independent methodology was used in a recent PhyloChip microarray analysis of the microbial communities inhabiting hot springs of the Tengchong region in China ( Briggs et al., 2014 ). However, this technology is not appropriate for the isolation of thermophilic microorganisms, their genes, or their proteins to determine their potential importance for biotechnology applications ( Brock & Freeze, 1969 ). The 2 approaches can be complementary; however, an initial microbial diversity analysis can be a first step in searching for bacteria with enzymatic activities for industrial application. A good example of this approach is a report by Kanokratana, Chanapan, Pootanakit, and Eurwilaichitr (2004) , which first described the biodiversity of bacteria and archaea from hot springs in Thailand. Years after this work, they reported on a functional screening of a metagenomic library derived from sediments of the hot springs, which resulted in the isolation of 2 novel genes encoding an esterase and a phospholipase ( Tirawongsaroj et al., 2008). In the present study, using a culture-dependent approach, we investigated the seasonal variation (Spring, Summer, Fall, and Winter) in bacterial diversity of 2 hot springs located in the geothermal system of Araró, Michoacán, México, which is a system independent from Los Azufres geothermal zone ( Brito et al., 2014; Viggiano-Guerra & Gutiérrez-Negrín, 2005 ). The physicochemical parameters of both hot springs were assessed and associated with fluctuations in bacterial biodiversity.Materials and methods
The geothermal system of the Araró region is located in the central part of Mexico, inside the Trans Mexican Volcanic Belt located in Michoacán State. The region is approximately 20 km west of the well-known Los Azufres geothermal field ( Fig. 1 ). The zone known as Zimirao (19°53′54″ N, 100°49′50″ W) is where most of the hot springs are located. There are about 50 hot springs in the Araró region, and many of them are used for recreational activities; however, the selected hot springs, Tina and Bonita, have relatively little disturbance and are far from the recreational area. Another interesting feature of these hot springs is that Bonita has low water emission and forms colourful microbial mats, while Tina has a constant water effluent and a little running stream, with microbial mats formed along the stream ( Fig. 2 ). Compared to Bonita, Tina presents only a very thin bacterial mat. Therefore, the systems exhibit different features that might influence the communities present in microbial mats.| Hot spring | Season | T | pH | BOD | TS | EC | Cl | SO4 | A | Ca | Mg | Na | As |
| Tina | Winter | 63 | 7.35 | 0.8 | 2,423 | 3,860 | 977 | 246 | 330 | 188 | 25 | 625 | 4.9 |
| Spring | 66 | 7.64 | 0.6 | 3,722 | 3,840 | 960 | 245 | 338 | 207 | 28 | 581 | 4.7 | |
| Summer | 78 | 6.95 | 0.6 | 2,616 | 3,950 | 976 | 252 | 347 | 209 | 31 | 610 | 6.6 | |
| Autumn | 74 | 7.07 | 3.0 | 2,410 | 3,510 | 867 | 228 | 330 | 153 | 45 | 545 | 6.1 | |
| Bonita | Winter | 50 | 6.75 | 0.6 | 2,896 | 3,650 | 928 | 239 | 310 | 230 | 22 | 533 | 3.7 |
| Spring | 45 | 7.03 | 0.8 | 3,184 | 3,801 | 951 | 245 | 337 | 202 | 29 | 586 | 4 | |
| Summer | 50 | 7.49 | 0.4 | 2,398 | 3,670 | 917 | 237 | 328 | 187 | 32 | 569 | 2.9 | |
| Autumn | 55 | 7.78 | 2.6 | 2,502 | 3,650 | 910 | 239 | 328 | 158 | 48 | 567 | 2.7 | |
Results
The physicochemical parameters of both hot springs are presented in Table 1 . Bonita and Tina hot springs have different superficial temperatures. Bonita temperatures range from 45 °C to 55 °C throughout the year, while in Tina, they vary from 63 °C to 78 °C. A neutral pH was found in both hot springs, with little seasonal variation; however, greater variation was found in Bonita, with a pH range of 6.75–7.78, whereas in Tina it ranged from 6.95 to 7.64. Salt contents, including Ca, Cl, SO 4 , Mg, and Na, of the springs also showed variation across seasons and differences between hot springs. Interestingly, arsenic concentration varied little across seasons in each hot spring, but concentrations were much higher in Tina (4.7–6.6 mg/L) than in Bonita (2.7–4 mg/L). Conductivity values were slightly higher for Tina during Winter, Spring, and Summer. Faecal coliforms (NMP/100 m3 ) were not detected in either hot spring (data from Conagua). In order to detect the abundance of culturable bacterial cells, the number of CFUs per gram of microbial mat was determined from each hot spring. In general, the number of CFUs was relatively low and fluctuated slightly across seasons. However, it was interesting to note that Bonita showed a 10-fold higher CFU count than the Tina hot spring (1 × 102 CFU/g and 1 × 103 CFU/g, respectively), regardless of the season. From randomly picked colonies subjected to RAPD analysis, 79 phylotypes (out of 109 bacterial isolates) were detected and subjected to 16S rDNA sequencing. Bacteria from 3 phyla were identified, including species from the genera Paenibacillus, Exiguobacterium, and Bacillus (76%) from the phylum Firmicutes, Aeromonas and Pseudomonas (18%) from the phylum Proteobacteria, and only Microbacterium (6%) from the phylum Actinobacteria. In total, 17 culturable bacterial species were detected in both hot springs. Figure 3 shows the phylogenetic relationships of the bacterial species. Fifty-seven 16S rDNA sequences, including the 17 representative bacterial species shared between both hot springs, were selected for the phylogenetic reconstruction based on length. All of the 16S rDNA sequences displayed close relationships with known bacterial species, particularly with representatives of the Bacillus genus. The clades were not associated with either of the hot springs or any other parameter measured.| Ecological indexes | Hot spring | |||||||
| Bonita | Tina | |||||||
| Winter | Spring | Summer | Autumn | Winter | Spring | Summer | Autumn | |
| Shannon | 1.91 | 2.02 | 1.53 | 1.07 | 1.91 | 1.77 | 1.75 | 1.17 |
| Evenness | 0.96 | 0.94 | 0.77 | 0.73 | 0.84 | 0.84 | 0.82 | 0.80 |
| Simpson | 0.16 | 0.14 | 0.26 | 0.44 | 0.17 | 0.20 | 0.21 | 0.37 |
| Sorensen a | 64% | |||||||
| Sorensen b | Winter 40% | Spring 48% | Summer 32% | Autumn 16% | ||||
| Physicochemical parameters | Pearson correlation coefficients | |
| Tina | Bonita | |
| Arsenic | 47.4 | 94.4 |
| Calcium | 82.3 | 87.9 |
| Chlorides | 97.9 | 87.0 |
| DBO | 95.4 | 78.9 |
| Electrical conductivity | 92.0 | 60.4 |
| Magnesium | 99.4 | 80.7 |
| pH | 42.5 | 91.7 |
| Sodium | 91.3 | 6.8 |
| Sulphates | 89.8 | 55.8 |
| Temperature | 50.1 | 90.5 |
| Total solids | 29.1 | 81.8 |
Discussion
The present study represents the first exploration of bacterial diversity in 2 of the approximately 50 hot springs located in Araró, Michoacán, which is in the middle of the Trans Mexican Volcanic Belt ( Israde-Alcántara & Garduño-Monroy, 1999 ). Unfortunately, most thermal springs in Araró, and nearby regions, are used for recreational purposes and have been drastically modified, leaving the undisturbed ecosystems unexplored and likely reducing their microbiological diversity and biotechnological potential ( López-Sandoval, Montejano, Carmona, Cantoral, & Becerra-Absalón, 2016 ). Therefore, there is a need for microbial censuses of the few hot springs in Araró that remain undisturbed. Most recent publications on the biodiversity of microbial mats from hot springs around the world have described studies based on non-culture methods, including denaturing gradient gel electrophoresis (DGGE), PhyloChip microarray, and sequencing of 16S rDNA gene libraries. Some of these studies have analysed the effect of seasonality and physicochemical parameters on microbial diversity ( Briggs et al., 2014; Lacap, Barraquio, & Pointing, 2007 ; Mackenzie et al., 2013 ). Here, it was our short-term goal to describe the bacterial diversity in microbial mats by first isolating aerobic heterotrophic thermophilic bacteria. Our long-term goal, however, is to obtain easy-culturable bacterial isolates for bioremediation or biodegradation. Araró hot springs are extreme environments where bacteria with potential for biodegradation may reside. Our results suggest that bacteria belonging primarily to division Firmicutes occur there ( Fig. 3 ). Interestingly, of the 13 species of Firmicutes isolated, only B. megaterium ( Baker, Gaffar, Cowan, & Suharto, 2001 ), E. profundum (Crapart et al., 2007), and a strain of Paenibacillus (Mead et al., 2012 ) have been isolated from thermal environments. To our knowledge, this is the first time that the remaining species have been identified as inhabitants of hydrothermal systems. B. subtilis, B. cereus, B. licheniformis, B. pumilus, and B. megaterium are common soil inhabitants (Slepecky & Hemphill, 2006 ), although they have the capacity to grow at high temperatures ( Slepecky & Hemphill, 2006; Yakimov, Timmis, Wray, & Fredrickson, 1995 ). The vast majority (> 90%) of the bacterial isolates from Tina and Bonita hot springs grew optimally at 50 °C (data not shown). Several studies have demonstrated that thermophilic bacilli, grown optimally above 40 °C, possess the potential to degrade or convert environmental pollutants ( Margesin & Schinner, 2001 ). In addition, mat-forming cyanobacterial strains have shown synergistic effects in degrading petroleum compounds like phenanthrene, pristane, n-octadecane, and dibenzothiophene ( Abed & Köster, 2005). Another genus frequently isolated from Tina and Bonita hot springs was Exiguobacterium . Strains of this genus have been isolated from many different sources, including glacier ice, hot springs in Yellowstone National Park, as well as other extreme environments ( Vishnivetskaya, Kathariou, & Tiedje, 2009 ). This genus comprises psychrophilic, mesophilic, and moderately thermophilic species ( Vishnivetskaya et al., 2009). E. profundum was also a frequent isolate. It is described as a halotolerant and moderately thermophilic bacterium, and it has been isolated from hydrothermal vents in the Pacific Ocean at depths of about 2,600 m (Crapart et al., 2007). Aeromonas hydrophila is a bacterium that has not been associated with high temperatures ( Janda & Abbott, 2010 ). However, some bacterial strains that are closely related to Aeromonas salmonicida (Huang et al., 2011) and A. sober have been obtained from hot springs in Tibet ( Yim, Hongmei, Aitchison, & Pointing, 2006 ). The region of Araró is close to the geothermal zone of Los Azufres, which comprises several hot springs, fumaroles, and boiling mud pools, and was explored in the 1980s for its geothermal potential ( Birkle & Merkle, 2000 ). Recently, the microbial diversity in microbial mats and mud pools from Los Azufres were analysed by T-RFLP and 16S rRNA gene library analyses, and the presence of a few genera, such as Rhodobacter, Acidithiobacillus, Thiomonas, Desulfurella, and Thermodesulfobium , was reported. The authors were also able to isolate 2 sulphate and sulphur reducers related to Thermodesulfobium and Desulfurella (Brito et al., 2014 ). Our results are not comparable to those found by Brito and colleagues, since the thermal systems, project goals, and methodologies to assess the bacterial diversity were very different. Tina and Bonita hot springs exhibit clear water emissions with well-formed, colourful microbial mats, while Brito and colleagues mainly analysed microbial mats from mud pools. This difference supports a previous suggestion that the Araró region represents an independent thermal system from Los Azufres, despite their close proximity ( Viggiano-Guerra & Gutiérrez-Negrín, 2005 ). However, the microbial diversity from the 2 thermal systems contains strains with potential biotechnological applications. The Araró hot springs are extreme thermophilic environments with elevated concentrations of salts and As. This is in agreement with diversity indexes that indicate low bacterial diversity. In addition, no significant changes in the microbial communities were detected over the 4 samplings. Our results suggest that the dominant species of Firmicutes inhabit and remain part of microbial mats in these springs. The Sørensen analysis also shows that Tina and Bonita hot springs share 64% of their bacterial species. However, similarity was variable, with some seasons showing similarities below 50%, suggesting that that these springs are independent from each other. However, a deeper analysis by PhyloChip or 16S rDNA gene pyrosequencing could reveal a wide panorama of non-culturable microbial communities in both hot springs. No significant correlation was found between temperature and bacterial diversity in Tina spring. However, for Bonita, our results suggest a significant correlation with this parameter. This is probably due to the stability of the bacterial community in Bonita spring throughout the year, with microbial mats that were maintained at about 1 cm thickness. It is also a closed system, in which the water emission is very low and water remains stagnant, with no entry or exit of water streams except for rainfall. Microbial communities may be affected by light and changes in temperature across seasons ranging from 45 °C to 55 °C and an environment that changes from a mesophilic to a thermophilic one. In the case of Tina, a thermophilic environment is maintained. The influence of temperature on the diversity of microbial communities has been widely reported for other hot springs ( Ferris & Ward, 1997; Mackenzie et al., 2013; Purcell et al., 2007; Ward et al., 1998; Yim et al., 2006 ). A significant correlation was also found between pH, Mg, and arsenic concentrations and bacterial community composition for Bonita, but not for Tina spring. In contrast, salt concentrations, electrical conductivity, and biological oxygen demand were correlated with bacterial community composition in Tina spring. Some hot springs, including some located in China and Chile ( Hou et al., 2013; Mackenzie et al., 2013 ), have considerable salt quantities. Sulphates, in particular, have been shown to affect archaeal and bacterial communities along with elevated temperatures, so it is suggested that, together, salt concentrations and temperature regulate prokaryotic diversity in thermophilic environments ( Purcell et al., 2007). Previous reports on the water quality of thermal recreational springs in Araró suggest high concentrations of As, with values ranging from 0.01 mg/L to 6.26 mg/L, which exceeded the World Health Organization (WHO) and Mexican regulations for drinking water use and suggested a potential health risk ( Vázquez-Vázquez, Cortés-Martínez, & Alfaro-Cuevas, 2015 ). Preliminary results in our lab show that most of the Bacillus strains isolated from Tina and Bonita springs contain putative arsenic resistance ( ars ) genes, which allow the bacteria to survive in elevated As concentrations. Several thermophilic strains of Bacillus isolated from Araró hot springs are being evaluated for bioremediation of metal pollutants.Acknowledgements
To the Consejo Nacional de Ciencia y Tecnología, México (Project No. 169346) and the Coordinación de la Investigación Científica, Universidad Michoacana de San Nicolás de Hidalgo (2014–2015) for financially supporting our research projects. CMPB received a scholarship from Conacyt, México.Referencias
Abed, R. M. M. and Koster J. (2005). The direct of aerobic heterotrophic bacteria associated with cyanobacteria in the degradation of oil compounds. International Biodeterioration Biodegradation, 55, 29-37.
Baker, G. C., Gaffar S., Cowan D. A. and Suharto A. R. (2001). Bacterial community analysis of Indonesian hot springs. FEMS Microbiology Letters, 200, 103-109.
Bohorquez, L. C., Delgado-Serrano L., Lopez G., Osorio-Forero C., Klepac-Ceraj V., Kolter R., Junca H., Baena S. and Zambrano M. M. (2012). In depth characterization via complementing culture-independent approaches of the microbial community in an acidic hot spring of the Colombian Andes. Microbial Ecology, 63, 103-115.
Briggs, B. R., Brodie E. L., Tom L. M., Dong H., Jiang H., Huang Q., Wang S., Hou W.,. Wu G, Huang L., Hedlund B. P., Zhang C., Dijkstra P., and Hungate B. A. (2014). Seasonal patterns in microbial communities inhabiting the hot springs of Tengchong, Yunnan Province, China. Environmental Microbiology, 16, 1579-1591.
Brito, E. M. S., Villegas-Negrete N., Sotelo-González A., Caretta C. A., Goñi-Urriza M., Gassie C., Hakil F., Colin Y., Duran R., Gutiérrez-Corona F. Piñon-Castillo H. A., Cuevas-Rodríguez G., Malm O., Torres J. P. M., Fahy A., Reyna-López G. E. and Guyoneaud R. (2014). Microbial diversity in Los Azufres geothermal field (Michoacán, México) and isolation of representative sulfate and sulfur reducers. Extremophiles, 18, 385-398.
Brock, T. D. (1997). The value of basic research: Discovery of Thermus aquaticus and other extreme thermophiles. Genetics 146, 1207-1210.
Brock, T. D. and Freeze H. (1969). Thermus aquaticus gen. n. and sp. n., a non-sporulating extreme thermophile. Journal of Bacteriology, 98, 289-297.
Crapart, S., Fardeau M.-L., Cayol J.-L., Thomas P., Sery C., Ollivier B. and Combet-Blanc Y. (2007). Exiguobacterium profundum sp. nov., a moderately thermophilic, lactic acid-producing bacterium isolated from a deep-sea hydrothermal vent. International Journal of Systematic and Evolutionary Microbiology, 57,287-292.
Ferris, M. J. and Ward D. M. (1997). Seasonal Distributions of Dominant 16S rRNA-Defined Populations in a Hot Spring Microbial Mats Examined by Denaturing Gradient Gel Electrophoresis. Applied and Environmental Microbiology, 63, 1375-1381.
Hernández-León, R., Rojas-Solis D., Contreras-Pérez M., Orozco-Mosqueda M. C., Macías-Rodríguez L. I., Reyes-de la Cruz H., Valencia-Cantero E. and Santoyo G. (2015). Characterization of the antifungal and plant growth-promoting effects of diffusible and volatile organic compounds produced by Pseudomonas fluorescens strains. Biological Control, 81, 83-92.
Hou, W., Wang S., Dong H., Jiang H., Briggs B. R., Peacock J. P., Huang Q., Huang L., Wu G., Zhi X., Li W., Dodsworth J. A., Hedlund B. P., Zhang C., Hartnett H. E., Dijkstra P., Hungate B. A. (2013). A comprehensive census of microbial diversity in hot springs of Tengchong, Yunnan Province China using 16S rRNA gene pyrosequencing. PLoS ONE, 8, 1-15, e53350.
Huang, Q., Dong C. Z., Dong R. M., Jiang H., Wang S., Wang G., Fang B., Ding X., Niu L., Li X., Zhang C. and Dong H. (2011). Archaeal and bacterial diversity in hot springs on the Tibetan Plateau, China. Extremophiles, 15, 549-563.
Huang, Q., Jiang H., Briggs B. R., Wang S., Hou W., Li G., Wu G., Solis R., Arcilla C. A., Abrajano T. and Dong H. (2013). Archaeal and bacterial diversity in acidic to circumneutral hot springs in the Philippines. FEMS Microbioly Ecology, 85, 452-464.
Israde-Alcántara, I. and Garduño-Monroy V. H. (1999). Lacustrine record in a volcanic intra-arc setting: The evolution of the late Neogene Cuitzeo Basin System (Central Western Mexico, Michoacán). Palaeogeography, Palaeoclimatology, Palaeoecology, 151, 209–227.
Janda, J. M. and Abbott S. L. (2010). The Genus Aeromonas: Taxonomy, Pathogenicity, and Infection. Clinical Microbiology Review, 23, 35-73.
Kanokratana, P., Chanapan S., Pootanakit K. and Eurwilaichitr L. (2004). Diversity and abundance of Bacteria and Archaea in the Bor Khlueng hot spring in Thailand. Journal of Basic Microbiology, 44, 430-444.
Kimura, H., Sugihara M., Yamamoto H., Patel B. K. C., Kato K. and Hanada S. (2005). Microbial community in a geothermal aquifer associated with the subsurface of the Great Artesian Basin, Australia. Extremophiles, 9, 407-414.
Klatt, C. G., Wood J. M., Rusch D. B., Bateson M. M., Hamamura N., Heidelberg J. F., Grossman A. R., Bhaya D., Cohan F. M., Kuhl M., Bryant D. A. and Ward D. M. (2011). Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential. International Society for Microbial Ecology Journal, 5, 1262-1278.
Lacap, D. C., Barraquio W. and Pointing S. B. (2007). Thermophilic microbial mats in a tropical geothermal location display pronounced seasonal changes but appear resilient to stochastic disturbance. Environmental Microbiology, 9, 3065-3076.
Lau, M.C.Y., Aitchison J. C. and Pointing S. B. (2009). Bacterial community composition in thermophilic microbial mats from five hot springs in central Tibet. Extremophiles, 13, 139-149.
Mackenzie, R., Pedrós-Alió C. and Díez B. (2013). Bacterial composition of microbial mats in hot springs in Northern Patagonia: variations with seasons and temperature. Extremophiles, 17, 123-136.
Margesin, R. and Schinner F. (2001). Biodegradation and biorremediation of hydrocarbons in extreme environments. Applied Microbiology and Biotechnology, 56, 650-663.
Mead, D. A., Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D. C., Goodwin L. A., Pitluck S., Chertkov O., Zhang X., Detter J. C., Han C. S., Tapia R., Land M., Hauser L. J., Chang Y. J., Kyrpides N. C., Ivanova N. N., Ovchinnikova G., Woyke T., Brumm C., Hochstein R., Schoenfeld T. and Brumm P. (2012). Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a novel Paenibacillus lautus strain isolated from Obsidian Hot Spring in Yellowstone National Park. Standards in Genomic Sciences, 6, 366-385.
Perevalova, A. A., Kolganova T. V., Birkeland N. K., Schleper C., Bonch-Osmolovskaya E. A. and Lebedinsky A. V. (2008). Distribution of Crenarchaeota representatives in terrestrial hot springs of Russia and Iceland. Applied and Environmental Microbiology, 74, 7620-7628.
Portillo, M. C., Sirin V., Kanoksilapatham W. and Gonzalez J. M. (2009). Differential microbial communities in hot spring mats from western Thailand. Extremophiles, 13, 321-331.
Purcell, D., Sompong U., Yim L. C., Barraclough T. G., Peerapornpisal Y. and Pointing. S. B. (2007). The effects of temperature, pH and sulphide on the community structure of hyperthermophilic streamers in hot springs of northern Thailand. FEMS Microbiology Ecology, 60, 456-466.
Samal, S., Rout G. R., Nayak S., Nanda R. M., Lenka P. C. and Das P. (2003). Primer screening and optimization for RAPD analysis of cashew. Biologia Plantarum, 46, 301-302.
Shannon, C. E. (1948). A mathematical Theory of communication. Bell System Technical Journal, 28, 42623-42656.
Simpson, E. H. (1949). Measurement of diversity. Nature ,163, 688.
Slepecky, R. A. and Hemphill H. E. (2006). The Genus Bacillus-Nonmedical, In M. Dworkin., S. Falkow, E. Rosenberg, K. H. Schleifer and E. Stackebrandt (Eds.) Prokaryotes (530-562). Springer, U.S.A.
Sørensen, T. (1948). A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons. Biologiske Skrifter, 5, 1-34.
Tamura, K., Peterson D., Peterson N., Stecher G., Nei M. and Kumar S. (2011). MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution, 28, 2731–2739.
Tirawongsaroj, P., Sriprang R., Harnpicharnchai P., Thongaram T., Champreda V., Tanapongpipat S., Pootanakit K. and Eurwilaichitr L. (2008). Novel thermophilic and thermostable lipolytic enzymes from Thailand hot spring metagenomic library. Journal of Biotechnology, 133, 42-49.
Tomova, I., Stoilova-Disheva M., Lyutskanova D., Pascual J., Petrov P. and Kambourova M. (2010). Phylogenetic analysis of the bacterial community in a geothermal spring, Rupi Basin, Bulgaria. World Journal of Microbiology and Biotechnology, 26, 2019-2028.
Vázquez-Vázquez, M. J., Cortés-Martínez R. and Alfaro-Cuevas R. (2015). Arsenic ocurrence and water quality in recreational thermal springs at Araro, Mexico. The International Journal of Science & Technology, 5, 1-5.
Viggiano-Guerra, J. C. and Gutiérrez-Negrín L. C. A. (2005). The Geothermal System of Araró, Mexico, as an Independent System of Los Azufres. In: Proceedings World Geothermal Congress, 24-29
Vishnivetskaya, T. A., Kathariou S. and Tiedje J. M. (2009). The Exiguobacterium genus: biodiversity and biogeography. Extremophiles, 13, 541-555.
Ward, D. M. and Castenholz R. W. (2000). Cyanobacteria in geothermal habitats. In: B. A. Whitton and M. Potts (Eds.) Ecology of Cyanobacteria (37-59). Kluwer Academic Publishers, The Netherlands.
Ward, D. M., Ferris M. J., Nold S. C. and Bateson M. M. 1998. A Natural View of Microbial Biodiversity within Hot Spring Cyanobacterial Mat Communities. Microbiology and Molecular Biology Reviews, 62, 1353-1370.
Weisburg, W. G., Barns S. M., Pelletier D. A. and Lane D. J. (1991). 16S Ribosomal DNA Amplification for Phylogenetic Study. Journal of Bacteriology, 173, 697-703.
Yakimov, M. M., Timmis K. N., Wray V. and Fredrickson H. L. (1995). Characterization of a new lipopeptide surfactant produced by thermotolerant and halotolerant subsurface Bacillus licheniformis BAS50. Applied and Environmental Microbiology, 61, 1706-1713.
Yim, L. C., Hongmei J., Aitchison J. C. and Pointing S. B. (2006). Highly diverse community structure in a remote central Tibetan geothermal spring does not display monotonic variation to thermal stress. FEMS Microbiology Ecology, 57, 80-91.
